PH01000328G0280's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT1G70650 : 7.30E-71
Blast annotation: Ran BP2/NZF zinc finger-like superfamily protein
2.Location
Scaffold: PH01000328
Strand: +
| Region | Start | End |
| gene | 165859 | 170779 |
| mRNA | 165859 | 170779 |
| exon | 165859 | 166593 |
| exon | 166984 | 167101 |
| exon | 167239 | 167621 |
| exon | 169820 | 169936 |
| exon | 170019 | 170117 |
| exon | 170192 | 170779 |
| CDS | 166169 | 166593 |
| CDS | 166984 | 167101 |
| CDS | 167239 | 167621 |
| CDS | 169820 | 169936 |
| CDS | 170019 | 170117 |
| CDS | 170192 | 170579 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00641.17 | zf-RanBP | 301 | 329 |
| PF00641.17 | zf-RanBP | 342 | 368 |
| PF00641.17 | zf-RanBP | 375 | 397 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.