PH01000331G1010's details annotation
1.Annotation
ICBR annotation: UDP-arabinose 4-epimerase 1, putative, expressed
Blast result AT1G30620 : 2.00E-136
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000331
Strand: -
| Region | Start | End |
| gene | 689289 | 693303 |
| mRNA | 689289 | 693303 |
| exon | 689289 | 689743 |
| exon | 689860 | 690004 |
| exon | 690189 | 690318 |
| exon | 690408 | 690508 |
| exon | 690624 | 690765 |
| exon | 690844 | 690935 |
| exon | 691183 | 691224 |
| exon | 691700 | 693303 |
| CDS | 689502 | 689743 |
| CDS | 689860 | 690004 |
| CDS | 690189 | 690318 |
| CDS | 690408 | 690508 |
| CDS | 690624 | 690765 |
| CDS | 690844 | 690935 |
| CDS | 691183 | 691224 |
| CDS | 691700 | 691825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01370.20 | Epimerase | 13 | 215 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003978 | UDP-glucose 4-epimerase activity |
| GO:0006012 | galactose metabolic process |
| GO:0044237 | cellular metabolic process |
| GO:0050662 | coenzyme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.