Annotation of co-expression genes

PH01000331G1150's details annotation

1.Annotation

ICBR annotation: GYF domain containing protein, putative, expressed

Blast result AT5G42950 : 3.10E-82
Blast annotation: GYF domain-containing protein

2.Location

Scaffold: PH01000331
Strand: -

RegionStartEnd
gene767605777502
mRNA767605777502
exon767605768912
exon769340769412
exon769467769638
exon770497771407
exon771438773161
exon773284773934
exon774592774657
exon774951775884
exon776060776127
exon777126777502
CDS768554768912
CDS769340769412
CDS769467769638
CDS770497771407
CDS771438773161
CDS773284773934
CDS774592774657
CDS774951775884
CDS776060776127
CDS777126777210

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001459protein binding,
protein folding,
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
Nucleotide_excision_repair
RNA_degradation
Ubiquitin_mediated_proteolysis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02213.15GYF465512

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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