Annotation of co-expression genes

PH01000332G0260's details annotation

1.Annotation

ICBR annotation: NTMC2Type1.2 protein, putative, expressed

Blast result AT2G20990 : 0.00E+00
Blast annotation: synaptotagmin A

2.Location

Scaffold: PH01000332
Strand: -

RegionStartEnd
gene163429168394
mRNA163429168394
exon163429163628
exon163932164063
exon164149164499
exon164606164834
exon164919164995
exon165380165454
exon165736165854
exon166402166525
exon166618166668
exon166783166881
exon167409168394
CDS163500163628
CDS163932164063
CDS164149164499
CDS164606164834
CDS164919164995
CDS165380165454
CDS165736165854
CDS166402166525
CDS166618166668
CDS166783166881
CDS167409167519

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000492SCY1_SCYL1 (from iTAK)
RLK-Pelle_RLCK-IXb (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
protein binding,
protein phosphatase type 2A complex,
coexpression networkCFinderM000777

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF17047.4SMP_LBD67168
PF00168.29C2226303
PF00168.29C2379481

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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