PH01000332G0920's details annotation
1.Annotation
ICBR annotation: trafficking protein particle complex subunit, putative, expressed
Blast result AT2G20930 : 4.80E-66
Blast annotation: SNARE-like superfamily protein
2.Location
Scaffold: PH01000332
Strand: -
| Region | Start | End |
| gene | 577079 | 579512 |
| mRNA | 577079 | 579512 |
| exon | 577079 | 577577 |
| exon | 577839 | 577920 |
| exon | 578293 | 578371 |
| exon | 578863 | 578959 |
| exon | 579082 | 579512 |
| CDS | 577239 | 577577 |
| CDS | 577839 | 577920 |
| CDS | 578293 | 578371 |
| CDS | 578863 | 578959 |
| CDS | 579082 | 579114 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000872 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) ER to Golgi vesicle-mediated transport, regulation_of_cell_cycle regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
| coexpression network | CFinderM001286 | GH31 Glycoside_Hydrolases ER_membrane_protein_complex phosphoacetylglucosamine mutase activity, RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04628.12 | Sedlin_N | 7 | 135 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0006810 | transport |
| GO:0006888 | ER to Golgi vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.