Annotation of co-expression genes

PH01000332G0950's details annotation

1.Annotation

ICBR annotation: 26S proteasome non-ATPase regulatory subunit 3, putative, expressed

Blast result AT1G20200 : 0.00E+00
Blast annotation: PAM domain (PCI/PINT associated module) protein

2.Location

Scaffold: PH01000332
Strand: -

RegionStartEnd
gene593890597568
mRNA593890597568
exon593890595118
exon595202595433
exon595483595484
exon595642595752
exon595845595899
exon596070596206
exon596274596411
exon597124597314
exon597435597568
CDS594606595118
CDS595202595433
CDS595483595484
CDS595642595752
CDS595845595899
CDS596070596206
CDS596274596411
CDS597124597314
CDS597435597525

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01399.26PCI315420
PF08375.10Rpn3_C424489

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Proteasome26S proteasome regulatory subunit N3ko03051K03033

10.Gene Ontology

GO AccessionGO Annotation
GO:0000502proteasome complex
GO:0005515protein binding
GO:0030234enzyme regulator activity
GO:0042176regulation of protein catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.