PH01000333G0620's details annotation
1.Annotation
ICBR annotation: ribosomal protein L22, putative, expressed
Blast result AT1G52370 : 6.10E-58
Blast annotation: Ribosomal protein L22p/L17e family protein
2.Location
Scaffold: PH01000333
Strand: +
| Region | Start | End |
| gene | 417773 | 422084 |
| mRNA | 417773 | 422084 |
| exon | 417773 | 418772 |
| exon | 419252 | 419334 |
| exon | 419644 | 419688 |
| exon | 419730 | 419810 |
| exon | 420358 | 420468 |
| exon | 420574 | 420640 |
| exon | 420730 | 422084 |
| CDS | 418628 | 418772 |
| CDS | 419252 | 419334 |
| CDS | 419644 | 419688 |
| CDS | 419730 | 419810 |
| CDS | 420358 | 420468 |
| CDS | 420574 | 420640 |
| CDS | 420730 | 420998 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00237.18 | Ribosomal_L22 | 112 | 213 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L22 | ko03011 | K02890 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015934 | large ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.