Annotation of co-expression genes

PH01000336G0640's details annotation

1.Annotation

ICBR annotation: aminotransferase, classes I and II, domain containing protein, expressed

Blast result AT5G11520 : 3.00E-114
Blast annotation: aspartate aminotransferase 3

2.Location

Scaffold: PH01000336
Strand: -

RegionStartEnd
gene431380436670
mRNA431380436670
exon431380431496
exon431696431816
exon432438432532
exon432664432785
exon433925434062
exon434228434391
exon434616434929
exon435126435209
exon435854435915
exon436011436082
exon436230436670
CDS431412431496
CDS431696431816
CDS432438432532
CDS432664432785
CDS433925434062
CDS434228434391
CDS434616434929
CDS435126435209
CDS435854435915
CDS436011436082
CDS436230436298

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00155.20Aminotran_1_236239

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0006520cellular amino acid metabolic process
GO:0008483transaminase activity
GO:0009058biosynthetic process
GO:0030170pyridoxal phosphate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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