PH01000336G0690's details annotation
1.Annotation
ICBR annotation: homeobox and START domains containing protein, putative, expressed
Blast result AT1G79840 : 0.00E+00
Blast annotation: HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
2.Location
Scaffold: PH01000336
Strand: -
| Region | Start | End |
| gene | 460443 | 465011 |
| mRNA | 460443 | 465011 |
| exon | 460443 | 461184 |
| exon | 461276 | 461362 |
| exon | 461467 | 461720 |
| exon | 461788 | 461962 |
| exon | 462094 | 462312 |
| exon | 462394 | 462495 |
| exon | 462612 | 462983 |
| exon | 463077 | 463277 |
| exon | 463503 | 463620 |
| exon | 464481 | 464734 |
| exon | 464874 | 465011 |
| CDS | 460798 | 461184 |
| CDS | 461276 | 461362 |
| CDS | 461467 | 461720 |
| CDS | 461788 | 461962 |
| CDS | 462094 | 462312 |
| CDS | 462394 | 462495 |
| CDS | 462612 | 462983 |
| CDS | 463077 | 463277 |
| CDS | 463503 | 463620 |
| CDS | 464481 | 464734 |
| CDS | 464874 | 464936 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 90 | 145 |
| PF01852.18 | START | 259 | 486 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.