PH01000336G1160's details annotation
1.Annotation
ICBR annotation: phospholipase, patatin family, putative, expressed
Blast result AT5G04040 : 2.00E-79
Blast annotation: Patatin-like phospholipase family protein
2.Location
Scaffold: PH01000336
Strand: -
| Region | Start | End |
| gene | 742911 | 744922 |
| mRNA | 742911 | 744922 |
| exon | 742911 | 744134 |
| exon | 744231 | 744922 |
| CDS | 742986 | 744134 |
| CDS | 744231 | 744356 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000281 | fatty-acyl-CoA_biosynthetic_process metabolic process, lipid metabolic process, Valine,_leucine_and_isoleucine_degradation TUB Transcription_Regulator(from iTAK) STE_STE11 (from iTAK) dihydrolipoyllysine-residue_(2-methylpropanoyl)transferase_activity alpha-Linolenic_acid_metabolism Linoleic_acid_metabolism Steroid_biosynthesis Arachidonic_acid_metabolism Ether_lipid_metabolism biotin_carboxylase_activity Glycerolipid_metabolism |
| coexpression network | CFinderM001061 | Valine,_leucine_and_isoleucine_degradation Fatty_acid_metabolism Biosynthesis_of_unsaturated_fatty_acids alpha-Linolenic_acid_metabolism ligase activity, oxidoreductase activity, acting on the CH-CH group of donors, biotin_carboxylase_activity acyl-CoA dehydrogenase activity, metabolic process, Peroxisome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.