PH01000336G1210's details annotation
1.Annotation
ICBR annotation: glutelin, putative, expressed
Blast result AT5G44120 : 1.80E-90
Blast annotation: RmlC-like cupins superfamily protein
2.Location
Scaffold: PH01000336
Strand: +
| Region | Start | End |
| gene | 760630 | 762510 |
| mRNA | 760630 | 762510 |
| exon | 760630 | 761025 |
| exon | 761109 | 761383 |
| exon | 761507 | 761986 |
| exon | 762078 | 762510 |
| CDS | 760698 | 761025 |
| CDS | 761109 | 761383 |
| CDS | 761507 | 761986 |
| CDS | 762078 | 762476 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00190.21 | Cupin_1 | 51 | 209 |
| PF00190.21 | Cupin_1 | 319 | 466 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0045735 | nutrient reservoir activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.