Annotation of co-expression genes

PH01000337G0050's details annotation

1.Annotation

ICBR annotation: sucrose-phosphatase, putative, expressed

Blast result AT2G35840 : 4.00E-157
Blast annotation: Sucrose-6F-phosphate phosphohydrolase family protein

2.Location

Scaffold: PH01000337
Strand: -

RegionStartEnd
gene2269234699
mRNA2269234699
exon2269223579
exon2371823764
exon2504925235
exon2610926396
exon2648326677
exon2679126892
exon2697227292
exon2739227460
exon3079430867
exon3104431138
exon3244532452
exon3311333249
exon3339134699
CDS2350223579
CDS2371823764
CDS2504925235
CDS2610926396
CDS2648326677
CDS2679126892
CDS2697227292
CDS2739227460
CDS3079430867
CDS3104431138
CDS3244532452
CDS3311333249
CDS3339133745

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05116.12S6PP235494
PF08472.9S6PP_C495626

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000287magnesium ion binding
GO:0003824catalytic activity
GO:0005986sucrose biosynthetic process
GO:0008152metabolic process
GO:0016791phosphatase activity
GO:0050307sucrose-phosphate phosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.