PH01000337G0250's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G03180 : 3.90E-24
Blast annotation: -
2.Location
Scaffold: PH01000337
Strand: +
| Region | Start | End |
| gene | 144308 | 148309 |
| mRNA | 144308 | 148309 |
| exon | 144308 | 144647 |
| exon | 146023 | 146071 |
| exon | 146154 | 146225 |
| exon | 146295 | 146462 |
| exon | 146844 | 146892 |
| exon | 147772 | 148309 |
| CDS | 144496 | 144647 |
| CDS | 146023 | 146071 |
| CDS | 146154 | 146225 |
| CDS | 146295 | 146462 |
| CDS | 146844 | 146892 |
| CDS | 147772 | 147794 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000682 | DNA_replication Ino80_complex DNA_replication,_Okazaki_fragment_processing nucleoside binding, single-stranded_DNA-dependent_ATPase_activity 5'-flap_endonuclease_activity ATP-dependent_5'-3'_DNA_helicase_activity DNA helicase activity, nucleobase-containing compound metabolic process, DNA-directed DNA polymerase activity, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.