Annotation of co-expression genes

PH01000338G0970's details annotation

1.Annotation

ICBR annotation: NAD dependent epimerase/dehydratase family domain containing protein, expressed

Blast result AT1G30620 : 0.00E+00
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein

2.Location

Scaffold: PH01000338
Strand: +

RegionStartEnd
gene703812709323
mRNA703812709323
exon703812705078
exon705493705606
exon705694705866
exon705897705992
exon706420706561
exon706682706776
exon706848706977
exon707058707202
exon707314709323
CDS704956705078
CDS705493705606
CDS705694705866
CDS705897705992
CDS706420706561
CDS706682706776
CDS706848706977
CDS707058707202
CDS707314707540

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01370.20Epimerase52336

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Amino sugar and nucleotide sugar metabolismUDP-arabinose 4-epimerase [EC:5.1.3.5]ko00520K12448

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0003978UDP-glucose 4-epimerase activity
GO:0006012galactose metabolic process
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.