PH01000339G0160's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G09580 : 4.50E-85
Blast annotation: -
2.Location
Scaffold: PH01000339
Strand: +
| Region | Start | End |
| gene | 120742 | 123892 |
| mRNA | 120742 | 123892 |
| exon | 120742 | 121069 |
| exon | 121175 | 121276 |
| exon | 121779 | 121938 |
| exon | 122024 | 122203 |
| exon | 122290 | 122424 |
| exon | 122964 | 123046 |
| exon | 123147 | 123240 |
| exon | 123332 | 123892 |
| CDS | 120810 | 121069 |
| CDS | 121175 | 121276 |
| CDS | 121779 | 121938 |
| CDS | 122024 | 122203 |
| CDS | 122290 | 122424 |
| CDS | 122964 | 123046 |
| CDS | 123147 | 123240 |
| CDS | 123332 | 123418 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
| coexpression network | CFinderM000188 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000395 | NAC Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, |
| coexpression network | CFinderM000396 | Steroid_hormone_biosynthesis Drug_metabolism_-_other_enzymes Pentose_and_glucuronate_interconversions Retinol_metabolism Drug_metabolism_-_cytochrome_P450 Ascorbate_and_aldarate_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 Porphyrin_and_chlorophyll_metabolism |
| coexpression network | CFinderM000397 | clathrin_coat_assembly clathrin_coat clathrin_binding 1-phosphatidylinositol_binding Spliceosome phospholipid binding, |
| coexpression network | CFinderM000632 | Zeatin_biosynthesis NAC Transcription_Regulator(from PlantTFDB) WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000652 | electron carrier activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, heme binding, ubiquitin ligase complex, protein ubiquitination, oxidation-reduction process, |
| coexpression network | CFinderM001244 | iron-sulfur cluster assembly, |
| coexpression network | CFinderM001342 | |
| coexpression network | CFinderM001538 | oligopeptide transport, transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.