PH01000339G0590's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase family 10 protein, putative, expressed
Blast result AT4G38650 : 1.00E-177
Blast annotation: Glycosyl hydrolase family 10 protein
2.Location
Scaffold: PH01000339
Strand: -
| Region | Start | End |
| gene | 388566 | 392645 |
| mRNA | 388566 | 392645 |
| exon | 388566 | 390366 |
| exon | 390461 | 390607 |
| exon | 390707 | 390808 |
| exon | 390922 | 391094 |
| exon | 391330 | 391486 |
| exon | 392320 | 392351 |
| exon | 392439 | 392645 |
| CDS | 389392 | 390366 |
| CDS | 390461 | 390607 |
| CDS | 390707 | 390808 |
| CDS | 390922 | 391094 |
| CDS | 391330 | 391486 |
| CDS | 392320 | 392351 |
| CDS | 392439 | 392532 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Carbohydrate-Binding_Modules | CBM22 |
| Glycoside_Hydrolases | GH10 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00331.19 | Glyco_hydro_10 | 213 | 473 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.