PH01000339G0820's details annotation
1.Annotation
ICBR annotation: OsSub28 - Putative Subtilisin homologue, expressed
Blast result AT4G34980 : 6.00E-177
Blast annotation: subtilisin-like serine protease 2
2.Location
Scaffold: PH01000339
Strand: +
| Region | Start | End |
| gene | 535597 | 539855 |
| mRNA | 535597 | 539855 |
| exon | 535597 | 537669 |
| exon | 537839 | 539855 |
| CDS | 537383 | 537669 |
| CDS | 537839 | 539126 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00082.21 | Peptidase_S8 | 5 | 95 |
| PF02225.21 | PA | 145 | 212 |
| PF00082.21 | Peptidase_S8 | 197 | 358 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.