PH01000340G1000's details annotation
1.Annotation
ICBR annotation: DDT domain containing protein, putative, expressed
Blast result AT4G12750 : 1.60E-52
Blast annotation: Homeodomain-like transcriptional regulator
2.Location
Scaffold: PH01000340
Strand: +
| Region | Start | End |
| gene | 679402 | 686192 |
| mRNA | 679402 | 686192 |
| exon | 679402 | 679877 |
| exon | 680364 | 680454 |
| exon | 680543 | 680959 |
| exon | 681649 | 681701 |
| exon | 682357 | 682587 |
| exon | 682701 | 682763 |
| exon | 682975 | 683191 |
| exon | 683275 | 683375 |
| exon | 685008 | 685304 |
| exon | 685559 | 686192 |
| CDS | 679476 | 679877 |
| CDS | 680364 | 680454 |
| CDS | 680543 | 680959 |
| CDS | 681649 | 681701 |
| CDS | 682357 | 682587 |
| CDS | 682701 | 682763 |
| CDS | 682975 | 683191 |
| CDS | 683275 | 683375 |
| CDS | 685008 | 685304 |
| CDS | 685559 | 685693 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport WASH_complex actin cytoskeleton, spliceosomal complex, pre-mRNA_intronic_binding |
| coexpression network | CFinderM001681 | HB-other Transcription_Regulator(from PlantTFDB) tRNA_3'-trailer_cleavage endoribonuclease activity, producing 5'-phosphomonoesters, regulation of transcription, DNA-dependent, sequence-specific DNA binding, RNA_transport sequence-specific DNA binding transcription factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-other |
| Transcription_Regulator(from PlantTFDB) | HB-other |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 149 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.