PH01000342G0300's details annotation
1.Annotation
ICBR annotation: nodulin MtN3 family protein, putative, expressed
Blast result AT5G53190 : 3.50E-58
Blast annotation: Nodulin MtN3 family protein
2.Location
Scaffold: PH01000342
Strand: +
| Region | Start | End |
| gene | 192952 | 195640 |
| mRNA | 192952 | 195640 |
| exon | 192952 | 193091 |
| exon | 193168 | 193204 |
| exon | 193292 | 193514 |
| exon | 194340 | 194501 |
| exon | 194831 | 194950 |
| exon | 195026 | 195640 |
| CDS | 193058 | 193091 |
| CDS | 193168 | 193204 |
| CDS | 193292 | 193514 |
| CDS | 194340 | 194501 |
| CDS | 194831 | 194950 |
| CDS | 195026 | 195187 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000500 | WRKY Transcription_Regulator(from PlantTFDB) sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03083.15 | MtN3_slv | 7 | 96 |
| PF03083.15 | MtN3_slv | 132 | 216 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.