PH01000345G0130's details annotation
1.Annotation
ICBR annotation: CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed
Blast result AT4G14340 : 2.00E-180
Blast annotation: casein kinase I
2.Location
Scaffold: PH01000345
Strand: -
| Region | Start | End |
| gene | 111974 | 118414 |
| mRNA | 111974 | 118414 |
| exon | 111974 | 112604 |
| exon | 112955 | 113088 |
| exon | 113180 | 113240 |
| exon | 113325 | 113392 |
| exon | 113463 | 113589 |
| exon | 113700 | 113784 |
| exon | 113875 | 113938 |
| exon | 114263 | 114324 |
| exon | 115163 | 115233 |
| exon | 116099 | 116194 |
| exon | 116353 | 116501 |
| exon | 116615 | 116684 |
| exon | 117827 | 117867 |
| exon | 117989 | 118414 |
| CDS | 112302 | 112604 |
| CDS | 112955 | 113088 |
| CDS | 113180 | 113240 |
| CDS | 113325 | 113392 |
| CDS | 113463 | 113589 |
| CDS | 113700 | 113784 |
| CDS | 113875 | 113938 |
| CDS | 114263 | 114324 |
| CDS | 115163 | 115233 |
| CDS | 116099 | 116194 |
| CDS | 116353 | 116501 |
| CDS | 116615 | 116684 |
| CDS | 117827 | 117867 |
| CDS | 117989 | 118064 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 10 | 228 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.