Annotation of co-expression genes

PH01000345G0370's details annotation

1.Annotation

ICBR annotation: SET domain containing protein, expressed

Blast result AT5G43990 : 1.00E-123
Blast annotation: SET-domain containing protein lysine methyltransferase family protein

2.Location

Scaffold: PH01000345
Strand: -

RegionStartEnd
gene317769327301
mRNA317769327301
exon317769318105
exon318398318494
exon318813318863
exon318950319016
exon319675319940
exon320193321286
exon322099322486
exon322627322822
exon324292324372
exon326692327301
CDS317933318105
CDS318398318494
CDS318813318863
CDS318950319016
CDS319675319940
CDS320193321286
CDS322099322486
CDS322627322822
CDS324292324372
CDS326692326816

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SET

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10440.8WIYLD74130
PF05033.15Pre-SET470627
PF00856.27SET637759

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005634nucleus
GO:0008270zinc ion binding
GO:0018024histone-lysine N-methyltransferase activity
GO:0034968histone lysine methylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.