PH01000345G0470's details annotation
1.Annotation
ICBR annotation: pentatricopeptide domain containing protein, putative
Blast result AT1G33350 : 4.00E-148
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000345
Strand: +
| Region | Start | End |
| gene | 387257 | 388898 |
| mRNA | 387257 | 388898 |
| exon | 387257 | 388898 |
| CDS | 387318 | 388883 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000407 | MutLalpha_complex Mismatch_repair Mismatch_repair mismatched DNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12854.6 | PPR_1 | 174 | 202 |
| PF13041.5 | PPR_2 | 206 | 252 |
| PF01535.19 | PPR | 280 | 303 |
| PF13041.5 | PPR_2 | 310 | 353 |
| PF01535.19 | PPR | 381 | 406 |
| PF14432.5 | DYW_deaminase | 481 | 519 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.