PH01000346G0700's details annotation
1.Annotation
ICBR annotation: BAH domain containing protein, expressed
Blast result AT5G11470 : 2.50E-42
Blast annotation: bromo-adjacent homology (BAH) domain-containing protein
2.Location
Scaffold: PH01000346
Strand: +
| Region | Start | End |
| gene | 582301 | 590698 |
| mRNA | 582301 | 590698 |
| exon | 582301 | 582948 |
| exon | 584348 | 584516 |
| exon | 584629 | 585041 |
| exon | 586008 | 586031 |
| exon | 586220 | 586312 |
| exon | 587133 | 587216 |
| exon | 588565 | 588643 |
| exon | 588749 | 588833 |
| exon | 589274 | 589385 |
| exon | 589467 | 589583 |
| exon | 589671 | 590698 |
| CDS | 582616 | 582948 |
| CDS | 584348 | 584516 |
| CDS | 584629 | 585041 |
| CDS | 586008 | 586031 |
| CDS | 586220 | 586312 |
| CDS | 587133 | 587216 |
| CDS | 588565 | 588643 |
| CDS | 588749 | 588833 |
| CDS | 589274 | 589385 |
| CDS | 589467 | 589583 |
| CDS | 589671 | 589718 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000253 | GT47 GlycosylTransferases sialyltransferase activity, Mismatch_repair mismatched DNA binding, protein glycosylation, DNA_replication |
| coexpression network | CFinderM000254 | GNAT Transcription_Regulator(from iTAK) GT47 GlycosylTransferases HSF Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000351 | katanin_complex SAGA-type_complex |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01426.17 | BAH | 37 | 134 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.