PH01000347G0120's details annotation
1.Annotation
ICBR annotation: RNA polymerase II transcription factor B subunit 4, putative, expressed
Blast result AT1G18340 : 8.80E-44
Blast annotation: basal transcription factor complex subunit-related
2.Location
Scaffold: PH01000347
Strand: +
| Region | Start | End |
| gene | 50255 | 54920 |
| mRNA | 50255 | 54920 |
| exon | 50255 | 50595 |
| exon | 50688 | 50776 |
| exon | 51020 | 51181 |
| exon | 52104 | 52157 |
| exon | 52272 | 52340 |
| exon | 53471 | 53559 |
| exon | 53897 | 53992 |
| exon | 54603 | 54920 |
| CDS | 50565 | 50595 |
| CDS | 50688 | 50776 |
| CDS | 51020 | 51181 |
| CDS | 52104 | 52157 |
| CDS | 52272 | 52340 |
| CDS | 53471 | 53559 |
| CDS | 53897 | 53992 |
| CDS | 54603 | 54660 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03850.13 | Tfb4 | 13 | 77 |
| PF03850.13 | Tfb4 | 86 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | transcription initiation factor TFIIH subunit 3 | ko03022 | K03143 |
| Nucleotide excision repair | transcription initiation factor TFIIH subunit 3 | ko03420 | K03143 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000439 | core TFIIH complex |
| GO:0006289 | nucleotide-excision repair |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.