PH01000347G1090's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G73970 : 7.20E-92
Blast annotation: -
2.Location
Scaffold: PH01000347
Strand: +
| Region | Start | End |
| gene | 622126 | 632829 |
| mRNA | 622126 | 632829 |
| exon | 622126 | 623959 |
| exon | 624100 | 625082 |
| exon | 625179 | 625225 |
| exon | 625453 | 625590 |
| exon | 625671 | 625916 |
| exon | 631996 | 632121 |
| exon | 632491 | 632829 |
| CDS | 623931 | 623959 |
| CDS | 624100 | 625082 |
| CDS | 625179 | 625225 |
| CDS | 625453 | 625590 |
| CDS | 625671 | 625916 |
| CDS | 631996 | 632121 |
| CDS | 632491 | 632754 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000136 | CPP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.