Annotation of co-expression genes

PH01000347G1160's details annotation

1.Annotation

ICBR annotation: cyclin-dependent kinase A-2, putative, expressed

Blast result AT3G48750 : 2.00E-141
Blast annotation: cell division control 2

2.Location

Scaffold: PH01000347
Strand: -

RegionStartEnd
gene667407673042
mRNA667407673042
exon667407669021
exon670469670522
exon670703670790
exon670897671060
exon671320671412
exon671970672143
exon672323672440
exon672551672735
exon672861673042
CDS668935669021
CDS670469670522
CDS670703670790
CDS670897671060
CDS671320671412
CDS671970672143
CDS672323672440
CDS672551672735
CDS672861672869

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase4317

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.