PH01000348G0200's details annotation
1.Annotation
ICBR annotation: universal stress protein domain containing protein, putative, expressed
Blast result AT3G53990 : 2.10E-44
Blast annotation: Adenine nucleotide alpha hydrolases-like superfamily protein
2.Location
Scaffold: PH01000348
Strand: +
| Region | Start | End |
| gene | 118968 | 121396 |
| mRNA | 118968 | 121396 |
| exon | 118968 | 119825 |
| exon | 119929 | 120038 |
| exon | 120156 | 120274 |
| exon | 120472 | 121396 |
| CDS | 119633 | 119825 |
| CDS | 119929 | 120038 |
| CDS | 120156 | 120274 |
| CDS | 120472 | 120550 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00582.25 | Usp | 11 | 147 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006950 | response to stress |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.