PH01000349G0860's details annotation
1.Annotation
ICBR annotation: synaptonemal complex protein 2, putative, expressed
Blast result AT1G22275 : 4.00E-158
Blast annotation: Myosin heavy chain-related protein
2.Location
Scaffold: PH01000349
Strand: -
| Region | Start | End |
| gene | 558534 | 568368 |
| mRNA | 558534 | 568368 |
| exon | 558534 | 559337 |
| exon | 559964 | 560026 |
| exon | 560107 | 560190 |
| exon | 560304 | 560396 |
| exon | 560486 | 560575 |
| exon | 561223 | 561309 |
| exon | 561383 | 561493 |
| exon | 561575 | 561682 |
| exon | 562517 | 562627 |
| exon | 562726 | 562794 |
| exon | 562870 | 562998 |
| exon | 563078 | 563326 |
| exon | 563428 | 564104 |
| exon | 564410 | 564508 |
| exon | 564773 | 564898 |
| exon | 564972 | 565179 |
| exon | 566863 | 566888 |
| exon | 567305 | 567433 |
| exon | 567526 | 568368 |
| CDS | 559239 | 559337 |
| CDS | 559964 | 560026 |
| CDS | 560107 | 560190 |
| CDS | 560304 | 560396 |
| CDS | 560486 | 560575 |
| CDS | 561223 | 561309 |
| CDS | 561383 | 561493 |
| CDS | 561575 | 561682 |
| CDS | 562517 | 562627 |
| CDS | 562726 | 562794 |
| CDS | 562870 | 562998 |
| CDS | 563078 | 563326 |
| CDS | 563428 | 564104 |
| CDS | 564410 | 564508 |
| CDS | 564773 | 564898 |
| CDS | 564972 | 565179 |
| CDS | 566863 | 566888 |
| CDS | 567305 | 567433 |
| CDS | 567526 | 567682 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000078 | RLK-Pelle_LRR-V (from iTAK) RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.