PH01000350G0140's details annotation
1.Annotation
ICBR annotation: zinc finger DHHC domain-containing protein, putative, expressed
Blast result AT3G26935 : 4.00E-113
Blast annotation: DHHC-type zinc finger family protein
2.Location
Scaffold: PH01000350
Strand: -
| Region | Start | End |
| gene | 68457 | 71901 |
| mRNA | 68457 | 71901 |
| exon | 68457 | 69052 |
| exon | 69152 | 69385 |
| exon | 69759 | 70064 |
| exon | 70399 | 70581 |
| exon | 71408 | 71901 |
| CDS | 68618 | 69052 |
| CDS | 69152 | 69385 |
| CDS | 69759 | 70064 |
| CDS | 70399 | 70581 |
| CDS | 71408 | 71503 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000694 | IWS1 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01529.19 | DHHC | 156 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.