PH01000350G0660's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G28060 : 1.60E-61
Blast annotation: Pre-mRNA-splicing factor 3
2.Location
Scaffold: PH01000350
Strand: -
| Region | Start | End |
| gene | 372511 | 375907 |
| mRNA | 372511 | 375907 |
| exon | 372511 | 375907 |
| CDS | 372771 | 375422 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.