PH01000352G0060's details annotation
1.Annotation
ICBR annotation: GAGA-binding protein, putative, expressed
Blast result AT5G42520 : 1.80E-84
Blast annotation: basic pentacysteine 6
2.Location
Scaffold: PH01000352
Strand: -
| Region | Start | End |
| gene | 27468 | 31878 |
| mRNA | 27468 | 31878 |
| exon | 27468 | 29145 |
| exon | 30486 | 30601 |
| exon | 31668 | 31878 |
| CDS | 28225 | 29145 |
| CDS | 30486 | 30601 |
| CDS | 31668 | 31770 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | BBR-BPC |
| Transcription_Regulator(from PlantTFDB) | BBR-BPC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06217.11 | GAGA_bind | 51 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.