PH01000352G0910's details annotation
1.Annotation
ICBR annotation: tRNA 2-phosphotransferase 1, putative, expressed
Blast result AT2G45330 : 2.30E-86
Blast annotation: RNA 2-phosphotransferase, Tpt1 / KptA family
2.Location
Scaffold: PH01000352
Strand: -
| Region | Start | End |
| gene | 639329 | 642336 |
| mRNA | 639329 | 642336 |
| exon | 639329 | 639553 |
| exon | 639649 | 639705 |
| exon | 639966 | 640088 |
| exon | 640164 | 640218 |
| exon | 641251 | 641340 |
| exon | 641605 | 641752 |
| exon | 641823 | 642336 |
| CDS | 639423 | 639553 |
| CDS | 639649 | 639705 |
| CDS | 639966 | 640088 |
| CDS | 640164 | 640218 |
| CDS | 641251 | 641340 |
| CDS | 641605 | 641752 |
| CDS | 641823 | 641902 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01885.15 | PTS_2-RNA | 40 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.