PH01000353G0580's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolases family 16, putative, expressed
Blast result AT1G14720 : 8.00E-109
Blast annotation: xyloglucan endotransglucosylase/hydrolase 28
2.Location
Scaffold: PH01000353
Strand: -
| Region | Start | End |
| gene | 402260 | 405898 |
| mRNA | 402260 | 405898 |
| exon | 402260 | 403153 |
| exon | 405086 | 405294 |
| exon | 405373 | 405473 |
| exon | 405563 | 405898 |
| CDS | 402688 | 403153 |
| CDS | 405086 | 405294 |
| CDS | 405373 | 405473 |
| CDS | 405563 | 405767 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH16 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00722.20 | Glyco_hydro_16 | 41 | 222 |
| PF06955.11 | XET_C | 254 | 290 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006073 | cellular glucan metabolic process |
| GO:0016762 | xyloglucan:xyloglucosyl transferase activity |
| GO:0048046 | apoplast |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.