PH01000353G0670's details annotation
1.Annotation
ICBR annotation: potyvirus VPg interacting protein, putative, expressed
Blast result AT1G14740 : 2.00E-120
Blast annotation: Protein of unknown function (DUF1423)
2.Location
Scaffold: PH01000353
Strand: +
| Region | Start | End |
| gene | 438333 | 443796 |
| mRNA | 438333 | 443796 |
| exon | 438333 | 440727 |
| exon | 440800 | 441469 |
| exon | 442832 | 443796 |
| CDS | 440488 | 440727 |
| CDS | 440800 | 441469 |
| CDS | 442832 | 443388 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001585 | bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07227.10 | PHD_Oberon | 136 | 259 |
| PF16312.4 | Oberon_cc | 350 | 477 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.