PH01000353G0900's details annotation
1.Annotation
ICBR annotation: LSM domain containing protein, expressed
Blast result AT1G20580 : 7.40E-48
Blast annotation: Small nuclear ribonucleoprotein family protein
2.Location
Scaffold: PH01000353
Strand: +
| Region | Start | End |
| gene | 575970 | 577213 |
| mRNA | 575970 | 577213 |
| exon | 575970 | 576451 |
| exon | 576549 | 576601 |
| exon | 576698 | 576764 |
| exon | 576862 | 577213 |
| CDS | 576293 | 576451 |
| CDS | 576549 | 576601 |
| CDS | 576698 | 576764 |
| CDS | 576862 | 576951 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01423.21 | LSM | 11 | 74 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | small nuclear ribonucleoprotein D3 | ko03041 | K11088 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.