PH01000355G0970's details annotation
1.Annotation
ICBR annotation: LMBR1 integral membrane protein, putative, expressed
Blast result AT5G65290 : 0.00E+00
Blast annotation: LMBR1-like membrane protein
2.Location
Scaffold: PH01000355
Strand: +
| Region | Start | End |
| gene | 681898 | 690480 |
| mRNA | 681898 | 690480 |
| exon | 681898 | 683645 |
| exon | 684711 | 684787 |
| exon | 685266 | 685424 |
| exon | 685818 | 686031 |
| exon | 686108 | 686194 |
| exon | 686283 | 686422 |
| exon | 686619 | 686699 |
| exon | 687768 | 687832 |
| exon | 688036 | 688211 |
| exon | 688628 | 688758 |
| exon | 688855 | 688942 |
| exon | 689104 | 689317 |
| exon | 689666 | 689763 |
| exon | 689940 | 690480 |
| CDS | 683478 | 683645 |
| CDS | 684711 | 684787 |
| CDS | 685266 | 685424 |
| CDS | 685818 | 686031 |
| CDS | 686108 | 686194 |
| CDS | 686283 | 686422 |
| CDS | 686619 | 686699 |
| CDS | 687768 | 687832 |
| CDS | 688036 | 688211 |
| CDS | 688628 | 688758 |
| CDS | 688855 | 688942 |
| CDS | 689104 | 689317 |
| CDS | 689666 | 689763 |
| CDS | 689940 | 690440 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04791.15 | LMBR1 | 5 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.