Annotation of co-expression genes

PH01000356G1140's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT1G31800 : 1.70E-77
Blast annotation: cytochrome P450, family 97, subfamily A, polypeptide 3

2.Location

Scaffold: PH01000356
Strand: -

RegionStartEnd
gene687505690226
mRNA687505690226
exon687505687987
exon688707688789
exon688871688951
exon689039689071
exon689221689322
exon689404689499
exon689599690226
CDS687933687987
CDS688707688789
CDS688871688951
CDS689039689071
CDS689221689322
CDS689404689499
CDS689599689730

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000340PEK_PEK (from iTAK)
Steroid_biosynthesis
Homologous_recombination
DNA metabolic process,
oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45017174

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.