PH01000357G0340's details annotation
1.Annotation
ICBR annotation: CESA1 - cellulose synthase, expressed
Blast result AT4G32410 : 0
Blast annotation: cellulose synthase 1
2.Location
Scaffold: PH01000357
Strand: +
| Region | Start | End |
| gene | 183297 | 192277 |
| mRNA | 183297 | 192277 |
| exon | 183297 | 183831 |
| exon | 184383 | 184578 |
| exon | 184763 | 184953 |
| exon | 185338 | 185422 |
| exon | 185518 | 185707 |
| exon | 186163 | 186345 |
| exon | 186528 | 186864 |
| exon | 186937 | 187086 |
| exon | 187180 | 187305 |
| exon | 187395 | 187607 |
| exon | 187680 | 187938 |
| exon | 188473 | 188831 |
| exon | 189541 | 189702 |
| exon | 189850 | 190200 |
| exon | 190562 | 190618 |
| exon | 190800 | 192277 |
| CDS | 183754 | 183831 |
| CDS | 184383 | 184578 |
| CDS | 184763 | 184953 |
| CDS | 185338 | 185422 |
| CDS | 185518 | 185707 |
| CDS | 186163 | 186345 |
| CDS | 186528 | 186864 |
| CDS | 186937 | 187086 |
| CDS | 187180 | 187305 |
| CDS | 187395 | 187607 |
| CDS | 187680 | 187938 |
| CDS | 188473 | 188831 |
| CDS | 189541 | 189702 |
| CDS | 189850 | 190200 |
| CDS | 190562 | 190618 |
| CDS | 190800 | 191387 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14569.5 | zf-UDP | 28 | 105 |
| PF03552.13 | Cellulose_synt | 318 | 671 |
| PF03552.13 | Cellulose_synt | 790 | 1163 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016760 | cellulose synthase (UDP-forming) activity |
| GO:0030244 | cellulose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.