PH01000357G1050's details annotation
1.Annotation
ICBR annotation: RST1, putative, expressed
Blast result AT3G27670 : 1.00E-75
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000357
Strand: +
| Region | Start | End |
| gene | 683840 | 699481 |
| mRNA | 683840 | 699481 |
| exon | 683840 | 684777 |
| exon | 686030 | 686105 |
| exon | 686629 | 686682 |
| exon | 689583 | 689664 |
| exon | 690102 | 690223 |
| exon | 690596 | 690726 |
| exon | 690805 | 690893 |
| exon | 691101 | 691198 |
| exon | 691296 | 691508 |
| exon | 691969 | 692046 |
| exon | 695417 | 695508 |
| exon | 696163 | 696617 |
| exon | 696955 | 697016 |
| exon | 697091 | 697387 |
| exon | 697717 | 697764 |
| exon | 698400 | 698423 |
| exon | 698660 | 699043 |
| exon | 699162 | 699481 |
| CDS | 684743 | 684777 |
| CDS | 686030 | 686105 |
| CDS | 686629 | 686682 |
| CDS | 689583 | 689664 |
| CDS | 690102 | 690223 |
| CDS | 690596 | 690726 |
| CDS | 690805 | 690893 |
| CDS | 691101 | 691198 |
| CDS | 691296 | 691508 |
| CDS | 691969 | 692046 |
| CDS | 695417 | 695508 |
| CDS | 696163 | 696617 |
| CDS | 696955 | 697016 |
| CDS | 697091 | 697387 |
| CDS | 697717 | 697764 |
| CDS | 698400 | 698423 |
| CDS | 698660 | 699043 |
| CDS | 699162 | 699275 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12530.7 | DUF3730 | 58 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.