Annotation of co-expression genes

PH01000358G0890's details annotation

1.Annotation

ICBR annotation: oxidoreductase, putative, expressed

Blast result AT1G35190 : 1.00E-133
Blast annotation: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

2.Location

Scaffold: PH01000358
Strand: -

RegionStartEnd
gene692326699595
mRNA692326699595
exon692326693042
exon693154693233
exon693457693502
exon693714693770
exon693921693979
exon694021694151
exon694232694368
exon694670694721
exon695079695177
exon695510695705
exon697836699595
CDS692952693042
CDS693154693233
CDS693457693502
CDS693714693770
CDS693921693979
CDS694021694151
CDS694232694368
CDS694670694721
CDS695079695177
CDS695510695705
CDS697836697928

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001446RLK-Pelle_LRR-III (from iTAK)
membrane,
ion transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14226.5DIOX_N13127
PF03171.192OG-FeII_Oxy179280

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0016491oxidoreductase activity
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.