PH01000359G0870's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT1G09710 : 7.60E-43
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01000359
Strand: +
| Region | Start | End |
| gene | 706404 | 712847 |
| mRNA | 706404 | 712847 |
| exon | 706404 | 706839 |
| exon | 706934 | 707126 |
| exon | 707306 | 707392 |
| exon | 708771 | 709139 |
| exon | 710052 | 710205 |
| exon | 710397 | 712847 |
| CDS | 706757 | 706839 |
| CDS | 706934 | 707126 |
| CDS | 707306 | 707392 |
| CDS | 708771 | 709139 |
| CDS | 710052 | 710205 |
| CDS | 710397 | 711724 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000336 | C2C2-LSD Transcription_Regulator(from iTAK) LSD Transcription_Regulator(from PlantTFDB) cellulose biosynthetic process, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001115 | vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) Oxidative_phosphorylation Phagosome |
| coexpression network | CFinderM001116 | protein folding, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001348 | retrograde vesicle-mediated transport, Golgi to ER, glycolipid transport, COPI vesicle coat, clathrin adaptor complex, glycolipid binding, glycolipid transporter activity, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 202 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.