Annotation of co-expression genes

PH01000360G0020's details annotation

1.Annotation

ICBR annotation: patatin, putative, expressed

Blast result AT4G37070 : 3.50E-53
Blast annotation: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein

2.Location

Scaffold: PH01000360
Strand: +

RegionStartEnd
gene450911193
mRNA450911193
exon45094805
exon55665753
exon59156362
exon68957059
exon89469242
exon983910194
exon1049011193
CDS46654805
CDS55665753
CDS59156362
CDS68957059
CDS89469242
CDS983910194
CDS1049010583

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001158photosystem,
chlorophyll binding,
photosynthetic electron transport chain,
photosynthesis, light reaction,
Photosynthesis
serine-type carboxypeptidase activity,
photosystem II,
coexpression networkCFinderM001172metabolic process,
mannosidase activity,
catalytic activity,
mannose metabolic process,
oxidoreductase activity, acting on CH-OH group of donors,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01734.21Patatin23317

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006629lipid metabolic process
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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