PH01000360G0190's details annotation
1.Annotation
ICBR annotation: CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT3G50530 : 0.00E+00
Blast annotation: CDPK-related kinase
2.Location
Scaffold: PH01000360
Strand: +
| Region | Start | End |
| gene | 121401 | 130740 |
| mRNA | 121401 | 130740 |
| exon | 121401 | 122083 |
| exon | 123510 | 123581 |
| exon | 125503 | 125742 |
| exon | 126527 | 126657 |
| exon | 127362 | 127403 |
| exon | 127503 | 127614 |
| exon | 127891 | 127969 |
| exon | 128091 | 128387 |
| exon | 128465 | 128577 |
| exon | 129094 | 129201 |
| exon | 129287 | 129349 |
| exon | 129431 | 129598 |
| exon | 129683 | 129801 |
| exon | 130151 | 130740 |
| CDS | 121874 | 122083 |
| CDS | 123510 | 123581 |
| CDS | 125503 | 125742 |
| CDS | 126527 | 126657 |
| CDS | 127362 | 127403 |
| CDS | 127503 | 127614 |
| CDS | 127891 | 127969 |
| CDS | 128091 | 128387 |
| CDS | 128465 | 128577 |
| CDS | 129094 | 129201 |
| CDS | 129287 | 129349 |
| CDS | 129431 | 129598 |
| CDS | 129683 | 129801 |
| CDS | 130151 | 130274 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 136 | 399 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005509 | calcium ion binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.