PH01000360G0390's details annotation
1.Annotation
ICBR annotation: FYVE zinc finger family protein, expressed
Blast result AT2G26210 : 3.40E-37
Blast annotation: Ankyrin repeat family protein
2.Location
Scaffold: PH01000360
Strand: -
| Region | Start | End |
| gene | 230527 | 234633 |
| mRNA | 230527 | 234633 |
| exon | 230527 | 231318 |
| exon | 231801 | 231974 |
| exon | 232104 | 232179 |
| exon | 232429 | 232553 |
| exon | 232619 | 232820 |
| exon | 232945 | 233012 |
| exon | 233379 | 234633 |
| CDS | 230935 | 231318 |
| CDS | 231801 | 231974 |
| CDS | 232104 | 232179 |
| CDS | 232429 | 232553 |
| CDS | 232619 | 232820 |
| CDS | 232945 | 233012 |
| CDS | 233379 | 233456 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001379 | small protein activating enzyme activity, cellular protein modification process, Ubiquitin_mediated_proteolysis proteasome complex, regulation of protein catabolic process, Proteasome enzyme regulator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01363.20 | FYVE | 8 | 66 |
| PF13857.5 | Ank_5 | 219 | 272 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.