Gene details

Annotation of co-expression genes

PH01000360G0570's details annotation

1.Annotation

ICBR annotation: aminotransferase, classes I and II, domain containing protein, expressed

Blast result AT1G72330 : 2.00E-101
Blast annotation: alanine aminotransferase 2

2.Location

Scaffold: PH01000360
Strand: +

Region	Start	End
gene	346359	351227
mRNA	346359	351227
exon	346359	346903
exon	347012	347062
exon	347937	347987
exon	348094	348159
exon	348242	348345
exon	348696	348774
exon	348848	348952
exon	349045	349155
exon	349423	349560
exon	350147	350350
exon	350465	351227
CDS	346793	346903
CDS	347012	347062
CDS	347937	347987
CDS	348094	348159
CDS	348242	348345
CDS	348696	348774
CDS	348848	348952
CDS	349045	349155
CDS	349423	349560
CDS	350147	350350
CDS	350465	350581

UCSC genome browser

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000421	pyruvate dehydrogenase complex, cellular modified amino acid biosynthetic process, glutathione biosynthetic process, pyruvate metabolic process, dihydrolipoyllysine-residue acetyltransferase activity, glutamate-cysteine ligase activity, glycogen_phosphorylase_activity Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis Pyruvate_metabolism Glutathione_metabolism transferase activity, transferring acyl groups, metabolic process,
coexpression network	CFinderM000962	6-phosphofructokinase complex, 6-phosphofructokinase activity, glycolysis, translation_initiation_factor_binding diphosphate-fructose-6-phosphate 1-phosphotransferase activity, eukaryotic translation initiation factor 3 complex, fructose_6-phosphate_metabolic_process translational initiation, ATP synthesis coupled proton transport, hydrogen ion transporting ATP synthase activity, rotational mechanism, Oxidative_phosphorylation RNA_transport
coexpression network	CFinderM001312	metalloendopeptidase activity, Riboflavin_metabolism 6-phosphofructokinase complex, GTP cyclohydrolase II activity, catalytic activity, 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, proteolysis, riboflavin biosynthetic process, metallopeptidase activity, 6-phosphofructokinase activity, glycolysis,
coexpression network	CFinderM001634	Citrate_cycle_(TCA_cycle) Pyruvate_metabolism Glycolysis_/_Gluconeogenesis transferase activity, transferring acyl groups, pyruvate dehydrogenase complex, dihydrolipoyllysine-residue acetyltransferase activity, metabolic process, pyruvate metabolic process, small-subunit processome,
coexpression network	CFinderM001686	Oxidative_phosphorylation GTnc GlycosylTransferases mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), small-subunit processome, proton-transporting V-type ATPase, V1 domain, proton-transporting two-sector ATPase complex, catalytic domain, ATP synthesis coupled proton transport, ATP metabolic process, proton transport, ATP hydrolysis coupled proton transport, Phagosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00155.20	Aminotran_1_2	145	275

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0003824	catalytic activity
GO:0009058	biosynthetic process
GO:0030170	pyridoxal phosphate binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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