PH01000360G0800's details annotation
1.Annotation
ICBR annotation: 3-oxoacyl-synthase, putative, expressed
Blast result AT1G74960 : 4.00E-163
Blast annotation: fatty acid biosynthesis 1
2.Location
Scaffold: PH01000360
Strand: +
| Region | Start | End |
| gene | 499269 | 509959 |
| mRNA | 499269 | 509959 |
| exon | 499269 | 500921 |
| exon | 501557 | 501736 |
| exon | 501845 | 502048 |
| exon | 502161 | 502271 |
| exon | 502369 | 502464 |
| exon | 502541 | 502586 |
| exon | 502706 | 502785 |
| exon | 508883 | 508951 |
| exon | 509292 | 509376 |
| exon | 509474 | 509628 |
| exon | 509703 | 509783 |
| exon | 509849 | 509959 |
| CDS | 500598 | 500921 |
| CDS | 501557 | 501736 |
| CDS | 501845 | 502048 |
| CDS | 502161 | 502271 |
| CDS | 502369 | 502464 |
| CDS | 502541 | 502586 |
| CDS | 502706 | 502785 |
| CDS | 508883 | 508951 |
| CDS | 509292 | 509376 |
| CDS | 509474 | 509628 |
| CDS | 509703 | 509783 |
| CDS | 509849 | 509872 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000082 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor, Biotin_metabolism Fatty_acid_biosynthesis metabolic process, RNA-dependent DNA replication, N,N-dimethylaniline monooxygenase activity, |
| coexpression network | CFinderM000187 | Biotin_metabolism Fatty_acid_biosynthesis |
| coexpression network | CFinderM000310 | Glycine,_serine_and_threonine_metabolism flavin adenine dinucleotide binding, oxidoreductase activity, acting on CH-OH group of donors, Biotin_metabolism oxidation-reduction process, alcohol metabolic process, |
| coexpression network | CFinderM000441 | oxidoreductase activity, acting on CH-OH group of donors, flavin adenine dinucleotide binding, Glycine,_serine_and_threonine_metabolism choline_dehydrogenase_activity alcohol metabolic process, Biotin_metabolism Fatty_acid_biosynthesis metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00109.25 | ketoacyl-synt | 124 | 369 |
| PF02801.21 | Ketoacyl-synt_C | 377 | 478 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid biosynthesis | 3-oxoacyl-[acyl-carrier-protein] synthase II?[EC:2.3.1.179] | ko00061 | K09458 |
| Biotin metabolism | 3-oxoacyl-[acyl-carrier-protein] synthase II?[EC:2.3.1.179] | ko00780 | K09458 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.