PH01000363G0160's details annotation
1.Annotation
ICBR annotation: ATMIN7, putative, expressed
Blast result AT3G43300 : 0.00E+00
Blast annotation: HOPM interactor 7
2.Location
Scaffold: PH01000363
Strand: -
| Region | Start | End |
| gene | 121576 | 131019 |
| mRNA | 121576 | 131019 |
| exon | 121576 | 123408 |
| exon | 123474 | 123827 |
| exon | 123966 | 124114 |
| exon | 124244 | 124367 |
| exon | 124473 | 124712 |
| exon | 125854 | 126271 |
| exon | 126409 | 127035 |
| exon | 127118 | 127302 |
| exon | 127427 | 127537 |
| exon | 127701 | 127907 |
| exon | 127987 | 128085 |
| exon | 128182 | 128278 |
| exon | 128455 | 128543 |
| exon | 128715 | 128768 |
| exon | 128901 | 129023 |
| exon | 129111 | 129179 |
| exon | 129281 | 129350 |
| exon | 129479 | 129537 |
| exon | 129648 | 129851 |
| exon | 129950 | 130034 |
| exon | 130122 | 130179 |
| exon | 130691 | 131019 |
| CDS | 123331 | 123408 |
| CDS | 123474 | 123827 |
| CDS | 123966 | 124114 |
| CDS | 124244 | 124367 |
| CDS | 124473 | 124712 |
| CDS | 125854 | 126271 |
| CDS | 126409 | 127035 |
| CDS | 127118 | 127302 |
| CDS | 127427 | 127537 |
| CDS | 127701 | 127907 |
| CDS | 127987 | 128085 |
| CDS | 128182 | 128278 |
| CDS | 128455 | 128543 |
| CDS | 128715 | 128768 |
| CDS | 128901 | 129023 |
| CDS | 129111 | 129179 |
| CDS | 129281 | 129350 |
| CDS | 129479 | 129537 |
| CDS | 129648 | 129851 |
| CDS | 129950 | 130034 |
| CDS | 130122 | 130179 |
| CDS | 130691 | 130805 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001747 | NAK (from iTAK) Sulfur_relay_system Thiamine_metabolism Golgi apparatus, cysteine metabolic process, membrane coat, clathrin adaptor complex, cysteine desulfurase activity, regulation of ARF protein signal transduction, cytoskeleton organization, ARF guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16213.4 | DCB | 36 | 85 |
| PF12783.6 | Sec7_N | 185 | 336 |
| PF01369.19 | Sec7 | 433 | 615 |
| PF09324.9 | DUF1981 | 928 | 1010 |
| PF16206.4 | Mon2_C | 1028 | 1147 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005086 | ARF guanyl-nucleotide exchange factor activity |
| GO:0005488 | binding |
| GO:0032012 | regulation of ARF protein signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.