PH01000363G0710's details annotation
1.Annotation
ICBR annotation: exostosin family domain containing protein, expressed
Blast result AT2G35100 : 9.00E-141
Blast annotation: Exostosin family protein
2.Location
Scaffold: PH01000363
Strand: +
| Region | Start | End |
| gene | 502126 | 507721 |
| mRNA | 502126 | 507721 |
| exon | 502126 | 503856 |
| exon | 504987 | 505352 |
| exon | 506263 | 506455 |
| exon | 506622 | 507721 |
| CDS | 503047 | 503856 |
| CDS | 504987 | 505352 |
| CDS | 506263 | 506455 |
| CDS | 506622 | 506647 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001304 | nucleoside-triphosphatase activity, ATPase activity, coupled to transmembrane movement of substances, GT47 GlycosylTransferases RLK-Pelle_CR4L (from iTAK) ABC_transporters ATPase activity, ATP binding, nucleotide binding, SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT47 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03016.14 | Exostosin | 53 | 371 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.