Annotation of co-expression genes

PH01000363G1030's details annotation

1.Annotation

ICBR annotation: CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Blast result AT5G19450 : 0.00E+00
Blast annotation: calcium-dependent protein kinase 19

2.Location

Scaffold: PH01000363
Strand: -

RegionStartEnd
gene700667706799
mRNA700667706799
exon700667702548
exon702708702938
exon703285703452
exon703544703659
exon703925704077
exon704871705014
exon705347705386
exon705707706799
CDS702396702548
CDS702708702938
CDS703285703452
CDS703544703659
CDS703925704077
CDS704871705014
CDS705347705386
CDS705707706231

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000006CAMK_CDPK (from iTAK)
transporter activity,
transport,
transmembrane transport,
polygalacturonase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase62177
PF00069.24Pkinase191292
PF13499.5EF-hand_7340399
PF13499.5EF-hand_7410473

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005509calcium ion binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.