PH01000364G0690's details annotation
1.Annotation
ICBR annotation: AAA-type ATPase family protein, putative, expressed
Blast result AT4G02480 : 0.00E+00
Blast annotation: AAA-type ATPase family protein
2.Location
Scaffold: PH01000364
Strand: +
| Region | Start | End |
| gene | 458938 | 472291 |
| mRNA | 458938 | 472291 |
| exon | 458938 | 459253 |
| exon | 459311 | 459676 |
| exon | 461183 | 461299 |
| exon | 461396 | 461470 |
| exon | 461705 | 461816 |
| exon | 462059 | 462230 |
| exon | 463610 | 463731 |
| exon | 463832 | 463923 |
| exon | 464752 | 464794 |
| exon | 465065 | 465268 |
| exon | 466030 | 466090 |
| exon | 466821 | 466969 |
| exon | 467098 | 467168 |
| exon | 467249 | 467419 |
| exon | 467509 | 467580 |
| exon | 467721 | 467822 |
| exon | 467922 | 467990 |
| exon | 468631 | 468709 |
| exon | 468792 | 468891 |
| exon | 468990 | 469062 |
| exon | 469301 | 469480 |
| exon | 469984 | 470106 |
| exon | 470183 | 470266 |
| exon | 470393 | 470577 |
| exon | 470660 | 470798 |
| exon | 470899 | 470958 |
| exon | 471233 | 471337 |
| exon | 472068 | 472291 |
| CDS | 459113 | 459253 |
| CDS | 459311 | 459676 |
| CDS | 461183 | 461299 |
| CDS | 461396 | 461470 |
| CDS | 461705 | 461816 |
| CDS | 462059 | 462230 |
| CDS | 463610 | 463731 |
| CDS | 463832 | 463923 |
| CDS | 464752 | 464794 |
| CDS | 465065 | 465268 |
| CDS | 466030 | 466090 |
| CDS | 466821 | 466969 |
| CDS | 467098 | 467168 |
| CDS | 467249 | 467419 |
| CDS | 467509 | 467580 |
| CDS | 467721 | 467822 |
| CDS | 467922 | 467990 |
| CDS | 468631 | 468709 |
| CDS | 468792 | 468891 |
| CDS | 468990 | 469062 |
| CDS | 469301 | 469480 |
| CDS | 469984 | 470106 |
| CDS | 470183 | 470266 |
| CDS | 470393 | 470577 |
| CDS | 470660 | 470798 |
| CDS | 470899 | 470958 |
| CDS | 471233 | 471337 |
| CDS | 472068 | 472181 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 862 | 991 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.